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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs1978189 chr7:7573405 C/G 1.11E-16 407 15.3 16.1 2.23 KM Plot
LGG rs1978450 chr5:155980730 C/A 5.16E-6 406 15.45 15.17 15.37 KM Plot
LGG rs1993118 chr6:56898034 A/G 3.31E-6 407 15.13 15.93 7.8 KM Plot
LGG rs199523397 chr7:64931037 C/T 7.6E-8 400 15.57 14.93 2.27 KM Plot
LGG rs199613031 chr19:23523603 GA/G 3.1E-6 403 15.32 16.72 7.8 KM Plot
LGG rs199722665 chr3:153667876 A/AAC 0 405 15.17 15.92 0.23 KM Plot
LGG rs199787030 chr16:67837731 A/AT 2.16E-11 407 15.17 18.37 6.47 KM Plot
LGG rs199800668 chr9:14642934 GT/G 0.000127 401 15.33 17.23 4.87 KM Plot
LGG rs199911309 chr7:56008870 TG/T 1.53E-10 405 15.3 15.93 7.8 KM Plot
LGG rs199980989 chr6:33799771 G/GA 3.48E-5 402 15.2 16.77 11.42 KM Plot
LGG rs199999283 chr14:20752508 A/T 2.22E-5 394 15.68 15.63 8.75 KM Plot
LGG rs200010149 chr6:151849877 G/GC 2.77E-8 404 15.35 15.7 3.77 KM Plot
LGG rs200137310 chr19:23573539 AT/A 2.97E-6 407 15.25 15.67 7.8 KM Plot
LGG rs200596573 chr7:64931237 C/T 7.59E-8 399 15.57 15.07 2.27 KM Plot
LGG rs200650302 chr7:64932013 A/C 7.59E-8 399 15.57 15.07 2.27 KM Plot